PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG097500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family RAV
Protein Properties Length: 308aa    MW: 33807.9 Da    PI: 9.8768
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG097500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.27.2e-123684155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         s++kGV   + +grW A+I+d      r +r++lg+f   e Aa+a++ a+ +++g
  Pavir.5KG097500.1.p 36 SRFKGVVPQP-NGRWGAQIYD------RhARVWLGTFSDQEIAARAYDVAAVRYRG 84
                         689***9788.8*********......44*************************98 PP

2B394.66.8e-30151244184
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+kv tpsdv+k++rlv+pk++ae+h       ++ + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD+v F+
  Pavir.5KG097500.1.p 151 FEKVVTPSDVGKLSRLVVPKQHAEKHfplkrspENTTGNGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTVAFS 240
                          99***************************99987777899*************************************************9 PP

                          ...E CS
                   B3  84 ...l 84 
                             +
  Pavir.5KG097500.1.p 241 qpvY 244
                          5543 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-163692IPR016177DNA-binding domain
CDDcd000182.25E-213692No hitNo description
PfamPF008477.2E-63684IPR001471AP2/ERF domain
SMARTSM003806.1E-243798IPR001471AP2/ERF domain
PROSITE profilePS5103219.9543792IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-203792IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.0E-37146263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-29148240IPR015300DNA-binding pseudobarrel domain
CDDcd100176.48E-29150239No hitNo description
PROSITE profilePS5086314.635151261IPR003340B3 DNA binding domain
PfamPF023625.6E-27151245IPR003340B3 DNA binding domain
SMARTSM010199.2E-22151250IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDSGTEVTFA ASNSSLESGG AAEPAAALHL LSRQPSRFKG VVPQPNGRWG AQIYDRHARV  60
WLGTFSDQEI AARAYDVAAV RYRGCEAITN FPGERPSAGE LAFLAAHSKS EIVDMLRKHT  120
YAAELRHGLC RGRGMGARVQ PTTPWAQKLL FEKVVTPSDV GKLSRLVVPK QHAEKHFPLK  180
RSPENTTGNG VLLNFEDGEG KVWRFRYSYW NSSQSYVLTK GWSRFVREKG LRAGDTVAFS  240
QPVYGQQDNN NQLFINYRKT PRKQDEAGHP DDAIAAEARS IKLFGVDIAG GGGREAGEKG  300
TANSWET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-4615027013127DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0958120.0FP095812.1 Phyllostachys edulis cDNA clone: bphyem125h21, full insert sequence.
GenBankFP0968350.0FP096835.1 Phyllostachys edulis cDNA clone: bphyem207b07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968155.11e-125PREDICTED: AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS01e-113Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A077RF861e-126A0A077RF86_WHEAT; Uncharacterized protein
TrEMBLA0A077RPT11e-126A0A077RPT1_WHEAT; Uncharacterized protein
TrEMBLA0A0H2UJ361e-126A0A0H2UJ36_WHEAT; Uncharacterized protein
STRINGMLOC_56567.11e-125(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-85related to ABI3/VP1 2